Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_013457: Vibrio sp. Ex25 chromosome 2, complete genome

NCBI: NC_013457

Host Lineage: Vibrio; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio sp. EX25 was isolated from samples taken from a deep-sea hydrothermal vent community along the East Pacific Rise. Vibrio species represent a significant portion of the culturable heterotrophic bacteria of oceans, coastal waters and estuaries. Various species of this genus are devastating pathogens for finfish, shellfish and mammals.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
114047416441423941Island text1.8003928.337817.5844Neighbours21BLASTN+IslandViewer 140474.gbk
2979102*99831619215Island text1.6285636.05552.7957Neighbours42BLASTN+979102.gbk
31703201*172926026060Island text2.601229.791222.1529Neighbours21BLASTN+IslandViewer 1703201.gbk