Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_013456: Vibrio sp. Ex25 chromosome 1, complete genome

NCBI: NC_013456

Host Lineage: Vibrio; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio sp. EX25 was isolated from samples taken from a deep-sea hydrothermal vent community along the East Pacific Rise. Vibrio species represent a significant portion of the culturable heterotrophic bacteria of oceans, coastal waters and estuaries. Various species of this genus are devastating pathogens for finfish, shellfish and mammals.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1145171*17166126491Island text2.5562732.078425.3853Neighbours21BLASTNIslandViewer 145171.gbk
221215023428822139Island text1.7778529.996224.9493Neighbours21BLASTN+IslandViewer 212150.gbk
31743046176911826073Island text1.5043530.064428.9012Neighbours21BLASTN+1743046.gbk
41819421*184038720967Island text1.9168129.574332.0358Neighbours21BLASTN+IslandViewer 1819421.gbk
51843000*186410221103Island text2.0730428.91621.5295Neighbours21BLASTN+IslandViewer 1843000.gbk
62528284*254628518002Island text1.5108232.806422.9443Neighbours21BLASTN+IslandViewer 2528284.gbk
72984491*300234717857Island text1.5459928.872818.5224Neighbours21BLASTN+IslandViewer 2984491.gbk
83011518303472823211Island text1.7274931.649231.5717Neighbours21BLASTN+IslandViewer 3011518.gbk