Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013450: Staphylococcus aureus subsp. aureus ED98, complete genome

NCBI: NC_013450

Host Lineage: Staphylococcus aureus; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: This strain was isolated from a broiler chicken in Northern Ireland. This organism is a major cause of nosocomial (hospital-acquired) and community-acquired infections. Since its discovery as an opportunistic pathogen, S. aureus continues to be a major cause of mortality and is responsible for a variety of infections including, boils, furuncles, styes, impetigo and other superficial skin infections in humans. Also known to cause more serious infections particularly in the chronically ill or immunocompromised. These include pneumonia, deep abscesses, osteomyelitis, endocarditis, phlebitis, mastitis and meningitis. The ability to cause invasive disease is associated with persistance in the nasal cavity of a host.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116000*3659920600Island text1.6125520.271728.3099Neighbours21BLASTN16000.gbk
2457827031724536Island text1.5528121.583226.276Neighbours21BLASTN+IslandViewer 45782.gbk
341212243109918978Island text3.196718.938527.7257Neighbours21BLASTN412122.gbk
444805446659918546Island text1.8501720.144331.8461Neighbours21BLASTN448054.gbk
5557109*58071923611Island text2.7820722.938734.3451Neighbours21BLASTN557109.gbk
685479087692822139Island text1.5888620.592238.6771Neighbours21BLASTN+854790.gbk
71446952149095544004Island text3.1401119.980533.3543Neighbours325BLASTN+1446952.gbk
81825010*184803423025Island text1.6806228.705944.0493Neighbours21BLASTN+1825010.gbk
92047000207519328194Island text1.7502721.834335.1802Neighbours21BLASTN+2047000.gbk
102306431*232449518065Island text4.3106830.974340.9353Neighbours325BLASTN+2306431.gbk
112463271248225518985Island text2.1681419.840635.0006Neighbours21BLASTN+2463271.gbk
122572530259407221543Island text3.3265825.753931.8929Neighbours21BLASTN+2572530.gbk