Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013446: Comamonas testosteroni CNB-2, complete genome

NCBI: NC_013446

Host Lineage: Comamonas testosteroni; Comamonas; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Comamonas testosteroni is commonly isolated from activated sludge from industrial wastewater treatment systems. This organism has been shown to be able to degrade a number of different compounds including chlorobenzenes, and may be important for the biodegradation of these compounds.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11173377*119764624270Island text1.9001329.539141.6722Neighbours11BLASTNIslandViewer 1173377.gbk
21648556170768159126Island text1.5491825.187726.3593Neighbours11BLASTN+IslandViewer 1648556.gbk
31724000*175930835309Island text1.6260127.772829.525Neighbours11BLASTN+IslandViewer 1724000.gbk
41889500*191816228663Island text1.5956328.91932.1483Neighbours11BLASTN1889500.gbk
52062862208173518874Island text1.5692523.823624.1077Neighbours11BLASTNIslandViewer 2062862.gbk
62130021215209922079Island text1.7304827.134125.0666Neighbours11BLASTN+2130021.gbk
72164974219310328130Island text1.8044526.383222.4295Neighbours11BLASTN+IslandViewer 2164974.gbk
82237854*227259934746Island text1.5773326.920221.6422Neighbours11BLASTN+IslandViewer 2237854.gbk
92623528264731923792Island text1.5033825.07930.3143Neighbours11BLASTN+2623528.gbk
102655955268195826004Island text1.8109926.950227.213Neighbours11BLASTN+2655955.gbk
112761000280309942100Island text2.1389330.5326.7483Neighbours11BLASTN+IslandViewer 2761000.gbk
122820000286592045921Island text2.5452634.07722.8018Neighbours11BLASTN+IslandViewer 2820000.gbk
132919005294440725403Island text1.7444429.89720.5287Neighbours11BLASTN+2919005.gbk
142961647*299744935803Island text1.84229.946825.4555Neighbours11BLASTN+IslandViewer 2961647.gbk
153034486305883724352Island text1.6468324.036420.8003Neighbours11BLASTN+3034486.gbk
163147202*318258835387Island text2.4109835.810431.1948Neighbours11BLASTN+IslandViewer 3147202.gbk
173209000323064521646Island text1.8427428.900822.9606Neighbours11BLASTN+IslandViewer 3209000.gbk
183520500354200621507Island text1.5385725.29321.0257Neighbours11BLASTN3520500.gbk
194045000407107926080Island text2.000732.314734.574Neighbours11BLASTN+IslandViewer 4045000.gbk
204182878420121918342Island text1.5583923.923926.7755Neighbours11BLASTN+4182878.gbk
214281250*430762526376Island text2.7035132.572926.2909Neighbours11BLASTN+IslandViewer 4281250.gbk
224511602453459922998Island text1.5985226.220322.7502Neighbours11BLASTN+IslandViewer 4511602.gbk
234723380*475330129922Island text2.9491144.64131.3218Neighbours11BLASTN+IslandViewer 4723380.gbk