Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013442: Gordonia bronchialis DSM 43247 plasmid pGBRO01, complete sequence

NCBI: NC_013442

Host Lineage: Gordonia bronchialis; Gordonia; Gordoniaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolation: Sputum of woman with cavitary disease of both upper lungs.; Temp: Mesophile; Temp: 28C; Habitat: Host. Pathogenic, aerobic Gram-positive bacterium. This organism has been known to cause infections in immunocompromised and immunocompentent hosts.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
165864509938514Island text1.8353120.703715.95Neighbours11BLASTN+6586.gbk