Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013441: Gordonia bronchialis DSM 43247, complete genome

NCBI: NC_013441

Host Lineage: Gordonia bronchialis; Gordonia; Gordoniaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolation: Sputum of woman with cavitary disease of both upper lungs.; Temp: Mesophile; Temp: 28C; Habitat: Host. Pathogenic, aerobic Gram-positive bacterium. This organism has been known to cause infections in immunocompromised and immunocompentent hosts.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
127877*5974431868Island text1.7809221.932417.7954Neighbours11BLASTN+27877.gbk
2382597*42422241626Island text1.6207420.823318.8713Neighbours11BLASTN+IslandViewer 382597.gbk
31221472124479723326Island text1.6039622.839727.08Neighbours11BLASTN+IslandViewer 1221472.gbk
41487058151769130634Island text1.4933916.552930.4525Neighbours11BLASTN+IslandViewer 1487058.gbk
52761459278449623038Island text1.3940815.260227.4759Neighbours11BLASTN+IslandViewer 2761459.gbk
62788806282218133376Island text1.5548718.045816.6364Neighbours11BLASTN+IslandViewer 2788806.gbk
72842134286273320600Island text1.6274420.622616.3954Neighbours11BLASTN+2842134.gbk
84539035455886719833Island text1.4965620.312528.5236Neighbours11BLASTN+IslandViewer 4539035.gbk
95025444505059925156Island text1.8098318.082417.2589Neighbours11BLASTN+IslandViewer 5025444.gbk