Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_013422: Halothiobacillus neapolitanus c2, complete genome

NCBI: NC_013422

Host Lineage: Halothiobacillus neapolitanus; Halothiobacillus; Halothiobacillaceae; Chromatiales; Proteobacteria; Bacteria

General Information: Isolation: Sulfide-rich natural spa; Temp: Mesophile; Temp: 30 - 40C. Halothiobacillus neapolitanus is a sulfur-oxidizing, chemoautotrophic, Gram-negative bacterium able to tolerate high concentrations of sulfide. This organism fixes CO2 using a polyhedral body called a carboxysome which contains the primary carbon fixing enzyme, ribulose bisphosphate carboxylase/oxygenase.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1991500*103909547596Island text1.5992230.939929.2065Neighbours42BLASTN+IslandViewer 991500.gbk
21604157162347719321Island text1.4878131.146645.7181Neighbours42BLASTN1604157.gbk
31732677175579823122Island text1.5848533.646941.8603Neighbours11BLASTN+IslandViewer 1732677.gbk
41755875180500249128Island text1.6016432.597123.9525Neighbours11BLASTN+1755875.gbk
52004478202318018703Island text1.5034828.374345.1517Neighbours11BLASTN2004478.gbk