Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013421: Pectobacterium wasabiae WPP163, complete genome

NCBI: NC_013421

Host Lineage: Pectobacterium wasabiae; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium wasabiae is a causal agent of soft rot disease of plants, an economically important pathogen of many crops. A pathogenic Gram-negative bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1579617736519405Island text2.2862934.171919.8304Neighbours41BLASTN+57961.gbk
216311418959926486Island text2.6527642.963729.851Neighbours41BLASTN+IslandViewer 163114.gbk
3385930*40496119032Island text1.5426337.591238.3725BLASTNIslandViewer 385930.gbk
4478586*50902930444Island text2.8323641.223719.5297Neighbours41BLASTN+IslandViewer 478586.gbk
555319358079227600Island text2.2778140.95728.5806Neighbours41BLASTN+IslandViewer 553193.gbk
670100575174450740Island text2.2200435.244723.2853Neighbours41BLASTN+IslandViewer 701005.gbk
780154282369422153Island text2.0307337.083523.6881Neighbours41BLASTN801542.gbk
81038500105753619037Island text2.0864135.782537.7208Neighbours51BLASTN+1038500.gbk
91143500116948625987Island text2.019136.425637.4031Neighbours51BLASTN1143500.gbk
101173051120171028660Island text3.9772946.621335.1751Neighbours41BLASTNIslandViewer 1173051.gbk
111397841141728819448Island text2.2060436.800829.9945Neighbours41BLASTN1397841.gbk
121505176152341618241Island text2.1380533.870417.8402Neighbours41BLASTN+IslandViewer 1505176.gbk
131545386156866923284Island text2.2070735.925333.1755Neighbours51BLASTN+1545386.gbk
141696746*172309926354Island text2.5507537.856527.7121Neighbours41BLASTN+IslandViewer 1696746.gbk
151744928176558420657Island text1.6608234.907743.3934Neighbours14BLASTN+IslandViewer 1744928.gbk
161780722180552624805Island text1.5486734.47727.3772Neighbours11BLASTNIslandViewer 1780722.gbk
171819036185909940064Island text1.5907834.027932.297Neighbours41BLASTN+IslandViewer 1819036.gbk
181954915*197410019186Island text1.5840532.648329.5042Neighbours51BLASTN+1954915.gbk
192004088202439520308Island text2.4630235.111935.1748Neighbours41BLASTN+2004088.gbk
202306000*232812222123Island text2.0360634.274729.8879Neighbours41BLASTN2306000.gbk
212453078*247692623849Island text1.8308433.791337.4102Neighbours41BLASTN2453078.gbk
222613137*263682223686Island text2.2089336.115223.1431Neighbours41BLASTNIslandViewer 2613137.gbk
232720500274898028481Island text1.8104134.625136.395Neighbours51BLASTN+IslandViewer 2720500.gbk
242972269300638334115Island text1.5542833.738246.775Neighbours41BLASTN2972269.gbk
253093995311483420840Island text1.9916533.479830.1681Neighbours41BLASTN+IslandViewer 3093995.gbk
263117639*314038322745Island text2.0586433.979821.6713Neighbours41BLASTN+3117639.gbk
273237633325919921567Island text1.7001835.853631.8248Neighbours41BLASTN+3237633.gbk
283279499331516735669Island text4.189244.724626.953Neighbours41BLASTNIslandViewer 3279499.gbk
293752619*377249719879Island text1.737233.639324.7746Neighbours51BLASTN+3752619.gbk
304006085403278526701Island text2.2694141.323839.9422Neighbours51BLASTN4006085.gbk
314714478*478002665549Island text3.2494844.546925.6546Neighbours41BLASTN+4714478.gbk
324790696*482022829533Island text3.3058943.075920.6412Neighbours41BLASTN+4790696.gbk