Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013416: Aggregatibacter actinomycetemcomitans D11S-1, complete genome

NCBI: NC_013416

Host Lineage: Aggregatibacter actinomycetemcomitans; Aggregatibacter; Pasteurellaceae; Pasteurellales; Proteobacteria; Bacteria

General Information: Aggregatibacter actinomycetemcomitans D11S-1 was recovered from a subject with aggressive periodontitis. Aggregatibacter actinomycetemcomitans, previously Actinobacillus actinomycetemcomitans typically resides in the oral cavity of humans and animals and can cause a number of diseases. The bacterium, along with 3 other organisms, is the main culprit in periodontis, which results in devastation to the bone supporting the teeth. Adherence to oral surfaces is controlled through the tad (tight adherence) locus, which may express proteins that are involved in type IV secretion.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116493*3535418862Island text1.5104527.352928.5906Neighbours41BLASTNIslandViewer 16493.gbk
2386301*40838122081Island text1.6996128.01911.7336Neighbours24BLASTNIslandViewer 386301.gbk
3668152*69868530534Island text2.2991932.572717.8492Neighbours24BLASTN+IslandViewer 668152.gbk
4820989*84592424936Island text1.9436628.219918.0589Neighbours24BLASTN+IslandViewer 820989.gbk
5875758*90109925342Island text2.5858431.773213.4414Neighbours41BLASTNIslandViewer 875758.gbk
6939668*96270723040Island text1.5507328.666120.0512Neighbours35BLASTN+IslandViewer 939668.gbk
71091432*110961418183Island text1.5916825.99424.0102Neighbours24BLASTN+IslandViewer 1091432.gbk
81246880126998923110Island text1.7407426.29824.3574Neighbours35BLASTN+IslandViewer 1246880.gbk
91429881*145213822258Island text1.6867726.769216.3784Neighbours35BLASTN+IslandViewer 1429881.gbk
101526920154563618717Island text1.6276726.383118.1752Neighbours35BLASTNIslandViewer 1526920.gbk
111588369161218823820Island text1.829826.030523.3463Neighbours35BLASTN+IslandViewer 1588369.gbk
121621469165023328765Island text2.8705531.441819.9213Neighbours21BLASTN+IslandViewer 1621469.gbk
131748848*176691818071Island text1.5203825.705327.6038Neighbours35BLASTNIslandViewer 1748848.gbk
141783349*180820124853Island text1.9869629.642121.3441Neighbours21BLASTN+IslandViewer 1783349.gbk