Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013411: Geobacillus sp. Y412MC61, complete genome

NCBI: NC_013411

Host Lineage: Geobacillus; Geobacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Isolation: Obsidian Hot Spring in Yellowstone; Country: USA; Temp: Mesophile. Recent rDNA analysis and DNA-DNA hybridization studies using spore-forming thermophilic subsurface isolates from formation waters of oilfields in Russia, Kazakhstan and China provided enough evidence to define the phylogenetically distinct, physiologically and morphologically consistent taxon Geobacillus. Geobacillus species are chemo-organotrophic, obligately thermophilic, neutrophilic, motile, spore-forming, aerobic or facultatively anaerobic.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
128446131765133191Island text1.9418236.921232.1042Neighbours31BLASTN+IslandViewer 284461.gbk
233454935568121133Island text1.5863431.231827.8779Neighbours31BLASTN+IslandViewer 334549.gbk
359723564259945365Island text2.0300635.81339.5916Neighbours31BLASTN+IslandViewer 597235.gbk
468190770277320867Island text1.5856530.589721.4448Neighbours31BLASTN+681907.gbk
573583875842422587Island text1.7805334.127127.1173Neighbours31BLASTNIslandViewer 735838.gbk
61168049*119161823570Island text1.591630.623226.8577Neighbours31BLASTN+IslandViewer 1168049.gbk
71454465148295328489Island text3.0007539.811815.0971Neighbours31BLASTN+IslandViewer 1454465.gbk
81587689*160981522127Island text1.5969129.661235.9578Neighbours31BLASTN+1587689.gbk
91941762196387222111Island text1.6947135.405931.7165Neighbours31BLASTN+IslandViewer 1941762.gbk
102191514*221566224149Island text1.5973329.811928.6896Neighbours31BLASTN+IslandViewer 2191514.gbk
112236166226457028405Island text1.7552834.997639.2429Neighbours31BLASTNIslandViewer 2236166.gbk
122739989276459924611Island text1.5813528.605540.1906Neighbours31BLASTN+IslandViewer 2739989.gbk
132767400281319145792Island text1.7380532.892530.2854Neighbours31BLASTN+IslandViewer 2767400.gbk
142951559297047418916Island text1.5392326.073130.3204Neighbours31BLASTN2951559.gbk
152975364300538530022Island text2.0812235.908524.1761Neighbours31BLASTN+IslandViewer 2975364.gbk
163010000*303273622737Island text1.4307928.343922.1891Neighbours11BLASTN+3010000.gbk
173201331*322466223332Island text1.4995537.068322.9321Neighbours31BLASTN+IslandViewer 3201331.gbk
183251500326909917600Island text1.519726.015341.625Neighbours21BLASTNIslandViewer 3251500.gbk
193314799335852243724Island text1.7581534.015132.898Neighbours11BLASTN+IslandViewer 3314799.gbk