Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013407: Methanocaldococcus vulcanius M7, complete genome

NCBI: NC_013407

Host Lineage: Methanocaldococcus vulcanius; Methanocaldococcus; Methanocaldococcaceae; Methanococcales; Euryarchaeota; Archaea

General Information: Isolation: Deep-sea hydrothermal chimney sample; Temp: Thermophile; Temp: 49 - 89C; Habitat: Deep sea, Marine. Methanocaldococcus vulcanius was isolated from a deep sea hydrothermal vent chimney in the East Pacific Rise.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1109533454123589Island text1.5708218.683133.3475Neighbours21BLASTN10953.gbk
214600016962923630Island text1.9373821.382133.2567Neighbours21BLASTN146000.gbk
3203539*22883425296Island text3.1305121.060737.17Neighbours21BLASTN203539.gbk
4333387*35632822942Island text2.3576516.828828.8098Neighbours21BLASTN333387.gbk
552938555547926095Island text1.8311920.837529.8528Neighbours21BLASTN+529385.gbk
672134474433922996Island text2.4367716.594731.0452Neighbours21BLASTN+721344.gbk
71177731*120069622966Island text2.3314618.650128.6911Neighbours21BLASTN1177731.gbk
81205747*123302227276Island text2.3938119.611732.5919Neighbours21BLASTN+1205747.gbk
91478811*149759918789Island text2.3619518.095432.4796Neighbours21BLASTN1478811.gbk
101527454*155193824485Island text2.6956620.349337.9806Neighbours21BLASTN1527454.gbk
111610221*163174921529Island text2.3452618.804736.0438Neighbours21BLASTN+1610221.gbk