Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013406: Paenibacillus sp. Y412MC10 chromosome, complete genome

NCBI: NC_013406

Host Lineage: Paenibacillus; Paenibacillus; Paenibacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Temp: Mesophile. Isolated from Obsidian Hot Spring, Yellowstone National Park. An obligately thermophilic, aerobic or facultatively anaerobic Gram-positive bacterium. It is chemoorganotrophic.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1303218*34059037373Island text4.1138143.523921.8832Neighbours21BLASTN+IslandViewer 303218.gbk
234799537037322379Island text1.7437934.365435.521Neighbours31347995.gbk
378130880961728310Island text2.4355639.616625.8117Neighbours31BLASTN+781308.gbk
41145268116809922832Island text1.4231538.071533.7313Neighbours315BLASTN+1145268.gbk
51217385128495067566Island text2.92240.660626.6332Neighbours21BLASTN+1217385.gbk
61640787165986219076Island text1.5233133.943324.1656Neighbours315BLASTN+1640787.gbk
71707570172754019971Island text1.6113433.38428.9337Neighbours21BLASTN1707570.gbk
82207520*223225024731Island text1.8115731.48134.9677Neighbours31BLASTN+2207520.gbk
92866000*291520449205Island text4.6790450.113926.2151Neighbours21BLASTN+2866000.gbk
103329791335324223452Island text1.4511733.110423.3281Neighbours31BLASTN+3329791.gbk
113400114344017840065Island text2.8020241.006821.2737Neighbours31BLASTN+3400114.gbk
123521489357006948581Island text3.0083245.181825.9588Neighbours21BLASTN+IslandViewer 3521489.gbk
133583474362282339350Island text2.7006942.539628.8934Neighbours21BLASTN+3583474.gbk
143650300367282722528Island text1.8074434.061317.7351Neighbours31BLASTN+3650300.gbk
153672857372311450258Island text2.4875839.540430.388Neighbours21BLASTN+3672857.gbk
163819577384555025974Island text2.2716437.518225.9745Neighbours21BLASTN+3819577.gbk
173851877387065518779Island text1.8545533.406321.6074Neighbours23BLASTN+3851877.gbk
183874157389565621500Island text1.765234.046725.4203Neighbours31BLASTN+3874157.gbk
193926531394675220222Island text1.7325333.663718.3305Neighbours31+3926531.gbk
203975512*399859023079Island text1.603834.192634.6936Neighbours31BLASTN+3975512.gbk
214000518401909918582Island text1.5736731.280424.5462Neighbours31BLASTN+4000518.gbk
224023367404611322747Island text1.7677729.696635.3149Neighbours31BLASTN+4023367.gbk
234323338434181518478Island text1.6175833.963624.467Neighbours31BLASTN+4323338.gbk
244478000450092622927Island text1.8000433.888620.9465Neighbours31BLASTN+4478000.gbk
255020690504216421475Island text1.641535.067634.0643Neighbours31BLASTN+5020690.gbk
265066769*512762760859Island text1.91136.042228.2613Neighbours21BLASTN+5066769.gbk
275954472597839723926Island text2.1668237.452914.019Neighbours31BLASTN+5954472.gbk
286052913607159918687Island text1.6093234.484447.452Neighbours315BLASTN+6052913.gbk
296422000*644307321074Island text1.5824542.082442.6074Neighbours29BLASTN6422000.gbk
306494079653184737769Island text5.5394648.884623.5472Neighbours21BLASTN+6494079.gbk
316568273*660155033278Island text2.1918636.879737.9861Neighbours31BLASTN6568273.gbk
327024149705967535527Island text1.7091634.342339.3795Neighbours21BLASTN+7024149.gbk
337092510*711449921990Island text1.7064532.535936.1128Neighbours31BLASTN+7092510.gbk