Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013385: Ammonifex degensii KC4, complete genome

NCBI: NC_013385

Host Lineage: Ammonifex degensii; Ammonifex; Thermoanaerobacteraceae; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Isolation: Neutral volcanic hot spring; Temp: Thermophile; Temp: 70C; Habitat: Fresh water, Hot spring. This organism is a thermophilic chemoautotroph able to grow by nitrate ammonification or by sulfate and sulfur reduction. It was isolated from a neutral volcanic hot spring.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
190331*11592425594Island text2.1363428.871925.2673Neighbours111BLASTN+IslandViewer 90331.gbk
275942080105841639Island text1.9380721.276117.2581Neighbours11BLASTNIslandViewer 759420.gbk
31007616103009922484Island text1.6032826.854325.8253Neighbours33BLASTN+1007616.gbk
41064188*108859924412Island text1.7511423.469627.2501Neighbours33BLASTN+1064188.gbk
51504650*152847923830Island text1.5194525.096737.3205Neighbours357BLASTN1504650.gbk
61617338163604818711Island text1.5602419.950832.3913Neighbours33BLASTN+1617338.gbk
71669510*169400224493Island text1.5213320.798932.7202Neighbours11BLASTN+1669510.gbk
81758383178047022088Island text2.0598932.014747.7877Neighbours33BLASTN1758383.gbk
91882549*192209939551Island text1.7343924.830637.0705Neighbours33BLASTN+1882549.gbk