Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013282: Cronobacter turicensis, complete genome

NCBI: NC_013282

Host Lineage: Cronobacter turicensis; Cronobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Cronobacter turicensis is an opportunistic pathogen that can cause infections such as necrotizing enterocolitis, bacteraemia, meningitis and brain abscess/lesions. Gram-negative bacterium. Turicensis is the Latin name of Zurich, as the type strain originates from Zurich, Switzerland.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1116649*13955822910Island text1.5372633.867334.1927Neighbours51BLASTN116649.gbk
2551219*58904737829Island text2.5995940.486319.7866Neighbours41BLASTN+IslandViewer 551219.gbk
364656966558719019Island text1.4974930.806226.5319Neighbours51BLASTN+646569.gbk
4923500*94659923100Island text1.9734736.876326.3984Neighbours41BLASTNIslandViewer 923500.gbk
51200993124927948287Island text1.6314632.5941.9797Neighbours41BLASTN+IslandViewer 1200993.gbk
61256769129009933331Island text2.1795238.874223.3945Neighbours51BLASTNIslandViewer 1256769.gbk
71804909*182709922191Island text1.7510335.496222.7863Neighbours41BLASTN+IslandViewer 1804909.gbk
81842412187000127590Island text2.2807537.493925.6958Neighbours41BLASTN1842412.gbk
92026083208019854116Island text2.2422840.024139.9924Neighbours41BLASTN+IslandViewer 2026083.gbk
102582720260756224843Island text2.049935.885124.5373Neighbours41BLASTN+IslandViewer 2582720.gbk
112827757286060332847Island text5.4934450.815921.3624Neighbours41BLASTNIslandViewer 2827757.gbk
123216226*324341527190Island text2.21141.278822.6806Neighbours51BLASTNIslandViewer 3216226.gbk
133389619341209922481Island text1.4957837.163633.4242Neighbours41BLASTN+IslandViewer 3389619.gbk
143719500*373815318654Island text1.5076631.681725.6609Neighbours51BLASTNIslandViewer 3719500.gbk
153781149380484323695Island text1.3264429.523326.7511Neighbours41BLASTN+3781149.gbk
163962188*399784335656Island text1.5403334.816441.2335Neighbours51BLASTN3962188.gbk
174312791*433597423184Island text1.9480835.041325.8844Neighbours41BLASTN4312791.gbk