Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013235: Nakamurella multipartita DSM 44233, complete genome

NCBI: NC_013235

Host Lineage: Nakamurella multipartita; Nakamurella; Nakamurellaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolation: Actived sludge cultured in fed-batch; Temp: Mesophile; Temp: 28C; Habitat: Sludge. Nakamurella multipartite DSM 44233 was isolated from activated sludge and is able in store polysaccharides inside the cell. Obligately aerobic chemoorganotrophic, polysaccharide-accumulating Gram-positive bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
140281942201619198Island text1.671313.977410.6306Neighbours11BLASTN402819.gbk
242256544109918535Island text1.6060212.925614.88Neighbours11BLASTN+422565.gbk
346404948759923551Island text2.2598215.408516.2505Neighbours11BLASTN+IslandViewer 464049.gbk
4508585*53729628712Island text1.8176615.847411.5837Neighbours11BLASTN+IslandViewer 508585.gbk
5593289*61584722559Island text2.6060915.54618.7579Neighbours11BLASTN+IslandViewer 593289.gbk
668290270766324762Island text2.5607416.119917.8923Neighbours11BLASTN+IslandViewer 682902.gbk
71218378*123891620539Island text1.5633713.478817.0829Neighbours11BLASTN1218378.gbk
81325975134970523731Island text1.5261217.157120.9282Neighbours11BLASTN+1325975.gbk
91354443137485420412Island text1.650513.760516.6573Neighbours11BLASTN+IslandViewer 1354443.gbk
101761539178059919061Island text1.5385714.117210.5981Neighbours11BLASTN+1761539.gbk
111938889*196008021192Island text1.5492315.030215.1358Neighbours11BLASTN+1938889.gbk
122129982*217218542204Island text2.0990116.412919.3806Neighbours11BLASTN+IslandViewer 2129982.gbk
132257899*229859940701Island text1.7419914.402224.503Neighbours11BLASTN+IslandViewer 2257899.gbk
142902617*295093548319Island text1.9731615.298913.4326Neighbours11BLASTN+IslandViewer 2902617.gbk
152956381297692720547Island text2.0774216.34416.6771Neighbours112956381.gbk
163129384315062521242Island text1.9863413.621711.5788Neighbours11BLASTN+IslandViewer 3129384.gbk
173812838*384142328586Island text1.5569113.329911.0062Neighbours11BLASTN+IslandViewer 3812838.gbk
183913000393222419225Island text1.6201613.670417.3042Neighbours11BLASTN+IslandViewer 3913000.gbk
194045589406814822560Island text1.5041314.019912.87Neighbours11BLASTN+4045589.gbk
204091185411164620462Island text1.7298714.749510.7041Neighbours11BLASTN+IslandViewer 4091185.gbk
214618908464215923252Island text1.8942414.769417.4887Neighbours11BLASTNIslandViewer 4618908.gbk
224938798496312324326Island text1.6252514.33649.49172NeighboursBLASTN+IslandViewer 4938798.gbk
234975947501259936653Island text2.6607817.733913.6401Neighbours11BLASTN+IslandViewer 4975947.gbk
245127148*516430037153Island text3.0879522.3621.1791Neighbours11BLASTN+IslandViewer 5127148.gbk
255849659587489725239Island text2.8807717.836117.785Neighbours11BLASTN+IslandViewer 5849659.gbk