Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013223: Desulfohalobium retbaense DSM 5692, complete genome

NCBI: NC_013223

Host Lineage: Desulfohalobium retbaense; Desulfohalobium; Desulfohalobiaceae; Desulfovibrionales; Proteobacteria; Bacteria

General Information: Isolation: Saline sediment from Retba Lake in Senegal; Temp: Mesophile; Temp: 35C. This organism is a moderately halophilic sulfate-reducing bacterium which was originally isolated from a hypersaline lake in Africa.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1343344*37097827635Island text2.3109547.226237.1155Neighbours310BLASTNIslandViewer 343344.gbk
244834347816129819Island text1.5972732.869224.0651Neighbours32BLASTN+IslandViewer 448343.gbk
368562871386228235Island text1.4932232.411236.0458Neighbours11BLASTN685628.gbk
4724394*77359949206Island text2.510844.05929.3787Neighbours32BLASTN+IslandViewer 724394.gbk
51090397112941839022Island text1.9582839.641226.6053Neighbours33BLASTN+IslandViewer 1090397.gbk
61188500121591227413Island text2.2792944.522535.0035Neighbours33BLASTN+IslandViewer 1188500.gbk
71349000138187732878Island text1.9846235.468231.5123Neighbours33BLASTN+IslandViewer 1349000.gbk
81763631178659822968Island text1.8391733.37444.0548Neighbours33BLASTN+IslandViewer 1763631.gbk
91848689*187538226694Island text1.9815331.048646.3222Neighbours33BLASTN+1848689.gbk
102279869230710527237Island text2.0937437.718933.8877Neighbours33BLASTN+IslandViewer 2279869.gbk
112337049*236160924561Island text1.4338332.502445.1943Neighbours11BLASTN2337049.gbk
122609697*264530735611Island text1.7741632.567235.4977Neighbours33BLASTN+2609697.gbk