Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013222: Robiginitalea biformata HTCC2501, complete genome

NCBI: NC_013222

Host Lineage: Robiginitalea biformata; Robiginitalea; Flavobacteriaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: Robiginitalea biformata was isolated from seawater taken at a depth of 10 meters from the Sargasso Sea (Atlantic Ocean). Although a member of the Flavobacteriaceae, the DNA G+C content of this organism is much higher than for other members of this family.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1229190*27188742698Island text2.7097646.306820.4932Neighbours32BLASTN+IslandViewer 229190.gbk
2299683*38036580683Island text2.9215247.013226.1222Neighbours32BLASTN+IslandViewer 299683.gbk
3432947*45734124395Island text1.9946137.392925.2995Neighbours316BLASTN+432947.gbk
461594864785731910Island text3.4347146.550318.3879Neighbours32BLASTN+IslandViewer 615948.gbk
572138474880827425Island text1.8862539.215529.3648Neighbours32BLASTN721384.gbk
6817686*85887241187Island text3.1315749.724222.0955Neighbours32BLASTN+IslandViewer 817686.gbk
71536203156425128049Island text3.0358445.888123.9583Neighbours32BLASTN1536203.gbk
81659619*169532635708Island text3.0222643.431918.6235Neighbours32BLASTN+1659619.gbk
91898164192477826615Island text1.8928732.757824.327Neighbours32BLASTNIslandViewer 1898164.gbk
102209340222972920390Island text1.6853834.862427.7756Neighbours32BLASTN2209340.gbk
112308542233002621485Island text1.770534.41534.8408Neighbours32BLASTN2308542.gbk
122595315261887023556Island text2.0028735.514520.5922Neighbours32BLASTN2595315.gbk
132795919*281939123473Island text1.8054333.198649.9391Neighbours316BLASTN2795919.gbk
143060482*308509924618Island text3.0291343.846923.2546Neighbours32BLASTN3060482.gbk
153098409312275124343Island text1.7637233.702254.6326Neighbours382+3098409.gbk