Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013216: Desulfotomaculum acetoxidans DSM 771, complete genome

NCBI: NC_013216

Host Lineage: Desulfotomaculum acetoxidans; Desulfotomaculum; Peptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolation: Pig waste in Gottingen, Germany; Temp: Mesophile; Temp: 37C; Habitat: Animal intestinal microflora, Fresh water. Desulfotomaculum acetoxidans has been isolated from fresh or seawater sediment and animal wastes. This organism is able to oxidize acetate to carbon dioxide with the production of hydrogen sulfide.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1293571*31635022780Island text1.6548429.161649.3909Neighbours22BLASTN293571.gbk
242687745359926723Island text1.8643540.135942.402Neighbours24BLASTN+IslandViewer 426877.gbk
3644408*67216327756Island text1.9342746.516945.0106Neighbours32BLASTNIslandViewer 644408.gbk
492137794409922723Island text1.4945631.578327.2384Neighbours21BLASTN+921377.gbk
595646198074524285Island text1.5994334.92535.3411Neighbours22BLASTN+IslandViewer 956461.gbk
61219775*124276122987Island text1.8363731.222649.5493Neighbours21BLASTN1219775.gbk
71335789135914923361Island text1.4996831.687745.4806Neighbours221335789.gbk
81442044147296530922Island text1.6736235.978642.0244Neighbours22BLASTN+1442044.gbk
91748241176920620966Island text1.6362436.280433.2854Neighbours32BLASTN1748241.gbk
102078444214170363260Island text1.801436.362739.2201Neighbours316BLASTN+IslandViewer 2078444.gbk
112806094283519529102Island text1.8590237.927836.6405Neighbours22BLASTNIslandViewer 2806094.gbk
123061491308348421994Island text1.5550136.366149.1016Neighbours32BLASTN+3061491.gbk
133376186*339624020055Island text1.5619131.356452.7226Neighbours21BLASTN3376186.gbk
143408608*343378525178Island text1.8551336.211140.5839Neighbours22BLASTN3408608.gbk
153473119349769324575Island text1.4109631.614834.383Neighbours21BLASTNIslandViewer 3473119.gbk
163625830364910523276Island text1.4838333.444838.2568Neighbours22BLASTN+3625830.gbk
173907497392759920103Island text1.5602635.362438.5309Neighbours22BLASTN+3907497.gbk
184097056*412172124666Island text1.5401331.292652.8688Neighbours21BLASTN+IslandViewer 4097056.gbk
194131563415380022238Island text1.5553634.309942.4937Neighbours22BLASTN+4131563.gbk
204404085*442849624412Island text1.7063532.651147.373Neighbours22BLASTN+4404085.gbk