Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013209: Acetobacter pasteurianus IFO 3283-01, complete genome

NCBI: NC_013209

Host Lineage: Acetobacter pasteurianus; Acetobacter; Acetobacteraceae; Rhodospirillales; Proteobacteria; Bacteria

General Information: Acetobacter aceti IFO 3283, was originally isolated from a pellicle (a kind of biofilm) on the surface of vinegar fermentation. Acetobacter pasteurianus is an acetic acid-producing bacterium commonly found associated with plants and plant products. This organism is used in the production of fermented foods, such as kefir, and vinegar.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116089220594645055Island text1.8848636.659331.9261Neighbours322BLASTN+IslandViewer 160892.gbk
2867500*88809920600Island text1.6255334.761530.0254Neighbours11BLASTN+IslandViewer 867500.gbk
31406793*142759920807Island text1.644830.399815.9205Neighbours322BLASTN+IslandViewer 1406793.gbk
41531366*154959918234Island text1.4973935.186646.0836Neighbours322BLASTN+IslandViewer 1531366.gbk
51663704168774924046Island text1.502631.894543.4889Neighbours322BLASTN+IslandViewer 1663704.gbk
61721721*174674525025Island text1.5607734.9152.6617Neighbours322BLASTN+IslandViewer 1721721.gbk
71925341195459929259Island text1.5409836.916321.0015Neighbours322BLASTN+IslandViewer 1925341.gbk
81969734199351223779Island text1.7666634.739222.8984Neighbours322BLASTN+IslandViewer 1969734.gbk
92032500*205574623247Island text1.7934435.512419.9557Neighbours322BLASTN+IslandViewer 2032500.gbk
102248119*229545347335Island text1.8106134.999436.7063Neighbours322BLASTN+IslandViewer 2248119.gbk
112337204236712329920Island text1.8481532.994126.761Neighbours41BLASTN+IslandViewer 2337204.gbk
122384826240502620201Island text1.5155730.741331.5345Neighbours322BLASTNIslandViewer 2384826.gbk
132414500243557521076Island text1.6565231.32824.6102Neighbours322+IslandViewer 2414500.gbk
142476039249469018652Island text1.545228.05237.3371Neighbours322BLASTN+IslandViewer 2476039.gbk
152536500255431617817Island text1.4934229.590231.4959Neighbours322BLASTN+IslandViewer 2536500.gbk
162582878*262254039663Island text1.579933.909430.6317Neighbours11BLASTN+IslandViewer 2582878.gbk
172759160*277974720588Island text1.5589331.418746.715Neighbours322BLASTN2759160.gbk
182782500*280575023251Island text1.9333642.008418.7222Neighbours322BLASTN+IslandViewer 2782500.gbk