Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013205: Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,

NCBI: NC_013205

Host Lineage: Alicyclobacillus acidocaldarius; Alicyclobacillus; Alicyclobacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Isolation: Yellowstone National Park, acid hot; Country: USA; Temp: Thermophile; Temp: 60C. Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius was first isolated from an acidic creek in Yellowston National Park and grows at a pH of 3.6. This organism is both thermophilic and acidophilic and produces heat and acid stable enzymes, such as amylase and esterase, which may be important in industry.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
119295*4562526331Island text2.801731.91438.2704Neighbours11BLASTN+IslandViewer 19295.gbk
2289291*31395124661Island text2.3782929.912445.4014Neighbours11BLASTN+IslandViewer 289291.gbk
352628157376347483Island text2.0397931.537641.6656Neighbours11BLASTN+IslandViewer 526281.gbk
4576583*61660740025Island text2.4692836.09439.3453Neighbours11BLASTN+IslandViewer 576583.gbk
564491466380118888Island text1.6243229.906431.7578Neighbours11BLASTN644914.gbk
674750277170824207Island text2.2288731.454138.0361Neighbours11BLASTN+IslandViewer 747502.gbk
785498388133026348Island text3.174237.9635.7103Neighbours11BLASTN+IslandViewer 854983.gbk
81123280*118575062471Island text2.3777633.122335.8674Neighbours11BLASTN+IslandViewer 1123280.gbk
91187812*125169463883Island text1.850329.783328.9023Neighbours11BLASTN+1187812.gbk
101275012*130378228771Island text3.164136.470240.4516Neighbours11BLASTN+1275012.gbk
111548500*161221263713Island text3.9059539.000742.1669Neighbours19BLASTN+IslandViewer 1548500.gbk
122332174235414821975Island text2.3266933.469138.4321Neighbours11BLASTN+IslandViewer 2332174.gbk
132610956*266117350218Island text1.9185933.237829.0183Neighbours11BLASTN+IslandViewer 2610956.gbk
142922343294962327281Island text2.179934.099738.1088Neighbours11BLASTN+2922343.gbk
152965110298386018751Island text1.6707228.591134.7698Neighbours11BLASTN+2965110.gbk