Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013204: Eggerthella lenta DSM 2243, complete genome

NCBI: NC_013204

Host Lineage: Eggerthella lenta; Eggerthella; Coriobacteriaceae; Coriobacteriales; Actinobacteria; Bacteria

General Information: Isolation: Rectal tumor; Temp: Mesophile; Temp: 37C; Habitat: Blood, Host, Human intestinal microflora. Eggerthella lenta DSM 2243, formerly Eubacterium lentum, is a normal member of human gastrointestinal flora. This organism has been isolated from cases of bacteremia. Gram positive, obligately anaerobic bacteria isolated from the human gastrointestinal tract.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1347825505820277Island text1.6367123.796233.6622Neighbours11BLASTN34782.gbk
27485510233927485Island text1.9506825.869433.1716Neighbours11BLASTN+IslandViewer 74855.gbk
379985782512625270Island text2.159928.654838.9065Neighbours11BLASTNIslandViewer 799857.gbk
4929434*96906339630Island text2.1354727.77728.5304Neighbours11BLASTN+IslandViewer 929434.gbk
5989103101209922997Island text1.4823622.94531.1122Neighbours11BLASTNIslandViewer 989103.gbk
61135397115854523149Island text1.5525123.565222.0672Neighbours11BLASTN+IslandViewer 1135397.gbk
71759985178425024266Island text2.0662424.586628.802Neighbours11BLASTN+IslandViewer 1759985.gbk
82234860*226359928740Island text2.7365832.374838.7692Neighbours11BLASTNIslandViewer 2234860.gbk
92305140232990924770Island text2.0154424.92130.9398Neighbours11BLASTN2305140.gbk
102371499240814536647Island text1.7544525.53142.2649Neighbours114BLASTN+IslandViewer 2371499.gbk
112826500287613249633Island text2.8296735.357824.5292Neighbours11BLASTNIslandViewer 2826500.gbk
122955500298012224623Island text1.9454625.643524.6472Neighbours11BLASTN+IslandViewer 2955500.gbk
133419817*344224322427Island text1.6386721.535811.8016Neighbours11BLASTN+IslandViewer 3419817.gbk
143491441351635124911Island text2.6250330.932935.1241Neighbours11BLASTN3491441.gbk
153613824*364749933676Island text2.3871932.109627.6275Neighbours11BLASTNIslandViewer 3613824.gbk