Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_013203: Atopobium parvulum DSM 20469, complete genome

NCBI: NC_013203

Host Lineage: Atopobium parvulum; Atopobium; Coriobacteriaceae; Coriobacteriales; Actinobacteria; Bacteria

General Information: Temp: Mesophile; Temp: 37 - 45C; Habitat: Host, Human airways, Oral microflora. A member of the lactic acid group of bacteria, commonly isolated from the gingival crevices of the human oral cavity. This organism has also occasionally been isolated from dental abscesses.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
120200824182239815Island text1.8381136.40833.3692Neighbours314BLASTN+IslandViewer 202008.gbk
2472679*49599223314Island text3.6991633.488621.7553Neighbours21BLASTN+IslandViewer 472679.gbk
31351941*137641824478Island text1.7865843.657934.4193BLASTN+1351941.gbk
41406158142459918442Island text1.8603131.748529.1631Neighbours211406158.gbk
51447340*147021422875Island text1.7619838.348951.3377BLASTN+1447340.gbk