Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013202: Halomicrobium mukohataei DSM 12286, complete genome

NCBI: NC_013202

Host Lineage: Halomicrobium mukohataei; Halomicrobium; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Temp: Mesophile; Temp: 45C; Habitat: Salt marsh, Soil. This organism is an extreme halophile requiring at least 14.5% NaCl to grow. Halomicrobium mukohataei DSM 12286 (ATCC 700874) was isolated from salt flats in Argentina.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1592789672237445Island text5.5945942.947927.4249Neighbours11BLASTN+IslandViewer 59278.gbk
2149473*17241222940Island text2.131123.756716.7195Neighbours11BLASTN+IslandViewer 149473.gbk
341850044709928600Island text3.1395732.617827.1834Neighbours11BLASTN+IslandViewer 418500.gbk
4606204*63153225329Island text2.2229225.668325.134Neighbours11BLASTN606204.gbk
5771161*81787046710Island text1.8346424.968920.0191Neighbours11BLASTN+771161.gbk
6906044*93762031577Island text2.2259126.61627.2469Neighbours11BLASTN+IslandViewer 906044.gbk
71144192*117411929928Island text4.9211339.058125.9083Neighbours11BLASTN+IslandViewer 1144192.gbk
81367447*140167534229Island text2.4503928.7323.6959Neighbours12BLASTN+IslandViewer 1367447.gbk
91492434*151468922256Island text2.1102923.399926.5696Neighbours11BLASTN+IslandViewer 1492434.gbk
101620753164509924347Island text2.3774527.108121.1279Neighbours12BLASTN+IslandViewer 1620753.gbk
111947876*197083622961Island text2.1334126.80923.0379Neighbours11BLASTN1947876.gbk
122042776*206831825543Island text1.7760324.87817.5252Neighbours11BLASTN2042776.gbk
132449500*246767918180Island text1.5254920.528322.2073Neighbours11BLASTN+2449500.gbk