Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_013201: Halomicrobium mukohataei DSM 12286 plasmid pHmuk01, complete

NCBI: NC_013201

Host Lineage: Halomicrobium mukohataei; Halomicrobium; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Temp: Mesophile; Temp: 45C; Habitat: Salt marsh, Soil. This organism is an extreme halophile requiring at least 14.5% NaCl to grow. Halomicrobium mukohataei DSM 12286 (ATCC 700874) was isolated from salt flats in Argentina.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
14500*2569521196Island text1.9271625.916723.3722Neighbours11BLASTN4500.gbk
2283815476826388Island text1.6106426.471328.2611Neighbours11BLASTN28381.gbk
314597316909923127Island text1.8459325.554235.422Neighbours12BLASTN+145973.gbk