Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013194: Candidatus Accumulibacter phosphatis clade IIA str. UW-1, complete

NCBI: NC_013194

Host Lineage: Accumulibacter phosphatis; Accumulibacter; ; ; Proteobacteria; Bacteria

General Information: Isolation: enhanced biological phosphorus removal; Country: USA; Temp: Mesophile; Habitat: Sediment, Sludge. Candidatus Accumulibactor phosphatis is a polyphosphate-accumulating, aerobic, Gram-negative bacterium that has been identified in enhanced biological phosphorus removal (EBPR) wastewater treatment systems. Removal of phosphorus from wastewater is important to avoid eutrophication (excess nutrients) in surface waters.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1696349903729404Island text1.7266122.195626.1623Neighbours11BLASTN69634.gbk
210200012465122652Island text1.7059623.05536.3324Neighbours11BLASTN+IslandViewer 102000.gbk
363403965427420236Island text1.508319.649814.1674Neighbours11BLASTN+IslandViewer 634039.gbk
476116678409922934Island text2.2525424.797325.3109Neighbours11BLASTN+IslandViewer 761166.gbk
5963735100191838184Island text1.9155724.702836.7445Neighbours11BLASTN+IslandViewer 963735.gbk
61040197105886218666Island text1.476326.842222.7616Neighbours11BLASTN+1040197.gbk
71631134166791036777Island text1.669424.63122.571Neighbours11BLASTN+IslandViewer 1631134.gbk
81955582197814522564Island text1.503820.142313.8507Neighbours11BLASTN+1955582.gbk
92020134204109920966Island text1.6127822.300220.2649Neighbours11BLASTN+IslandViewer 2020134.gbk
102115000213455519556Island text1.5358323.106220.5719Neighbours11BLASTN+2115000.gbk
112788299281220223904Island text2.1701328.523527.8053Neighbours11BLASTN+2788299.gbk
123724500374978425285Island text2.4719825.455640.1773Neighbours11BLASTN+3724500.gbk
133861409388230520897Island text1.5174522.863627.8999Neighbours11BLASTN+3861409.gbk
143984377*400260218226Island text1.4912424.282626.7146Neighbours11BLASTN+3984377.gbk
154034854405291818065Island text1.5483420.376321.58Neighbours11BLASTN+4034854.gbk
164305205432971824514Island text1.4626225.334443.3609Neighbours11BLASTN+4305205.gbk
174405764443009924336Island text1.5287724.720317.9742Neighbours11BLASTN4405764.gbk
184964000*500529241293Island text1.6993425.082618.9277Neighbours11BLASTN+IslandViewer 4964000.gbk