Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013193: Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid

NCBI: NC_013193

Host Lineage: Accumulibacter phosphatis; Accumulibacter; ; ; Proteobacteria; Bacteria

General Information: Isolation: enhanced biological phosphorus removal; Country: USA; Temp: Mesophile; Habitat: Sediment, Sludge. Candidatus Accumulibactor phosphatis is a polyphosphate-accumulating, aerobic, Gram-negative bacterium that has been identified in enhanced biological phosphorus removal (EBPR) wastewater treatment systems. Removal of phosphorus from wastewater is important to avoid eutrophication (excess nutrients) in surface waters.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1389186468325766Island text1.5378724.101437.6197Neighbours11BLASTN38918.gbk