Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013192: Leptotrichia buccalis DSM 1135, complete genome

NCBI: NC_013192

Host Lineage: Leptotrichia buccalis; Leptotrichia; Leptotrichiaceae; Fusobacteriales; Fusobacteria; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Blood, Human oral microflora. Leptotrichia buccalis DSM 1135 was isolated from dental plaque. This organism is a member of the normal human oral microbial community but has occasionally been implicated in cases of septicemia and endocarditis.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1631119378730677Island text2.5938320.833.6807Neighbours21BLASTN+63111.gbk
2107672*13303725366Island text4.1918427.409645.1073Neighbours21BLASTN107672.gbk
3171000*19590324904Island text3.7360525.679340.3151Neighbours21BLASTN171000.gbk
4232778*28299350216Island text3.2519723.088938.8217Neighbours21BLASTN+232778.gbk
530547834288637409Island text1.7164519.291728.6093Neighbours21BLASTN+305478.gbk
6374000*39364719648Island text1.7044119.178631.7213Neighbours21BLASTN+374000.gbk
7469771*49651726747Island text2.2923622.847234.0386Neighbours21BLASTN+469771.gbk
851960054303223433Island text1.8435717.746833.0917Neighbours21BLASTN519600.gbk
961893664793428999Island text1.9934325.14431.6659Neighbours21BLASTN+618936.gbk
10664408*68591721510Island text1.6472120.969131.4646Neighbours21BLASTN+664408.gbk
1181585483809922246Island text1.9469418.783430.1437Neighbours21BLASTN+815854.gbk
1295800097990821909Island text1.9368319.215128.822Neighbours21BLASTN+958000.gbk
131033177105664723471Island text2.8789916.901835.3636Neighbours21BLASTN+1033177.gbk
141504310152432220013Island text2.1399319.289133.0582Neighbours21BLASTN1504310.gbk
151765981*178974923769Island text1.8651217.968830.1803Neighbours21BLASTN+1765981.gbk
161824174*184802223849Island text1.9289720.764433.6239Neighbours21BLASTN+1824174.gbk
171886337*191224425908Island text2.1220322.629632.6854Neighbours21BLASTN+1886337.gbk
181941002*196028519284Island text1.5863520.051131.368Neighbours21BLASTN+1941002.gbk
191993718*201717323456Island text2.0031521.069731.2669Neighbours21BLASTN1993718.gbk
202381901*240566523765Island text1.8735118.914236.2224Neighbours21BLASTN2381901.gbk
212434664*246949934836Island text1.5379618.87427.5557Neighbours21BLASTN+2434664.gbk