Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013174: Jonesia denitrificans DSM 20603, complete genome

NCBI: NC_013174

Host Lineage: Jonesia denitrificans; Jonesia; Jonesiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolation: Boiled ox blood; Temp: Mesophile; Temp: 37C. This species was formerly classified as Listeria denitrificans, and is the only species of the genus Jonesia. It is a Gram-positive nonspore-forming, motile rod that is catalase positive, oxidase negative, and facultatively anaerobic.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
123421*6198738567Island text3.0341142.926545.3483Neighbours11BLASTN+IslandViewer 23421.gbk
273948*10169527748Island text2.6362834.32941Neighbours11BLASTN+IslandViewer 73948.gbk
3309943*34995340011Island text1.7767831.085538.2841Neighbours11BLASTN+309943.gbk
4373726*39441720692Island text1.7618729.413948.6637Neighbours11BLASTN373726.gbk
5501326*52431822993Island text1.4859928.951848.2519Neighbours11+501326.gbk
656285658103118176Island text1.6754227.447139.4323Neighbours11562856.gbk
7601434*62022318790Island text2.3638929.629754.2667Neighbours11BLASTN601434.gbk
8650986*67158320598Island text2.0070630.274850.8609Neighbours11BLASTN650986.gbk
981515583511619962Island text1.6570128.091646.449Neighbours11BLASTN+IslandViewer 815155.gbk
10923737*94667622940Island text1.6245830.392837.3066Neighbours56BLASTN923737.gbk
111254874*127885823985Island text1.8260827.585739.1975Neighbours11BLASTN1254874.gbk
121366786138459917814Island text2.0110930.191249.6502Neighbours11BLASTN+1366786.gbk
131459730*148266422935Island text1.7993629.135751.3086Neighbours11BLASTN1459730.gbk
142013000204416031161Island text2.0226730.012241.8002Neighbours11BLASTN+2013000.gbk
152163947*218201918073Island text1.5286128.149341.7408Neighbours11BLASTN+IslandViewer 2163947.gbk
162321000236197640977Island text1.5929632.461850.6329Neighbours11BLASTN+IslandViewer 2321000.gbk
172455420*249080635387Island text1.7440133.484651.9432Neighbours11BLASTN+IslandViewer 2455420.gbk
182564979*259224527267Island text1.8523131.494442.5008Neighbours11BLASTN+2564979.gbk
192624365264440820044Island text1.6794728.167641.284Neighbours11BLASTN+2624365.gbk
202712000273803326034Island text1.4270730.453642.496Neighbours11BLASTN+2712000.gbk