Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013173: Desulfomicrobium baculatum DSM 4028, complete genome

NCBI: NC_013173

Host Lineage: Desulfomicrobium baculatum; Desulfomicrobium; Desulfomicrobiaceae; Desulfovibrionales; Proteobacteria; Bacteria

General Information: Isolation: Manganese ore; Temp: Mesophile; Temp: 28-37C. This organism is a sulfate-reducing anaerobic bacterium which has been isolated from a variety of environmental sources such as manganese ore, freshwater sediment, industrial wastewater, and oil reservoir production waters.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
189233209923177Island text1.746136.948851.0223Neighbours14BLASTN+8923.gbk
213346616133527870Island text3.2565649.526832.1878Neighbours11BLASTN133466.gbk
3302375*32285320479Island text2.2576333.07845.6542Neighbours11BLASTN302375.gbk
4815696*84198426289Island text2.8518142.106241.0704Neighbours11BLASTN+815696.gbk
5953633*99379740165Island text4.4233550.417533.6012Neighbours11BLASTN+IslandViewer 953633.gbk
61231213125559024378Island text1.9422238.437223.7488Neighbours11BLASTN+1231213.gbk
71259898129609936202Island text1.5738934.212424.0722Neighbours11BLASTN+1259898.gbk
81305916132735821443Island text1.6956132.743629.7326Neighbours11BLASTN+1305916.gbk
91356526*141309956574Island text4.2144449.942734.2798Neighbours23BLASTN+IslandViewer 1356526.gbk
101437464145907521612Island text2.1061133.727439.6614Neighbours33BLASTN1437464.gbk
111609123163199222870Island text1.9046935.673518.1275Neighbours11BLASTN+1609123.gbk
121671288*168957118284Island text1.7927432.54529.2727Neighbours11BLASTN+1671288.gbk
131712138*173959227455Island text2.5999446.940631.433Neighbours11BLASTN+1712138.gbk
141861269188946828200Island text2.8542746.331731.7846Neighbours11BLASTN1861269.gbk
152261396*229174030345Island text2.1073940.389835.6078Neighbours11BLASTN+2261396.gbk
162305394*232895923566Island text1.5394233.736634.5657Neighbours11BLASTN+IslandViewer 2305394.gbk
172507516253285025335Island text1.5242834.186534.584Neighbours11BLASTN+2507516.gbk
182884887*293159946713Island text2.2992138.779836.2219Neighbours23BLASTNIslandViewer 2884887.gbk
193132517*316476932253Island text2.0135440.480633.7949Neighbours11BLASTN3132517.gbk
203679326373266253337Island text3.2954542.528745.1587Neighbours14BLASTN+IslandViewer 3679326.gbk
213854368*387937225005Island text2.6884742.453153.4027Neighbours11BLASTN3854368.gbk
223890370*390934018971Island text2.1857532.990849.8142Neighbours11BLASTN3890370.gbk