Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013172: Brachybacterium faecium DSM 4810, complete genome

NCBI: NC_013172

Host Lineage: Brachybacterium faecium; Brachybacterium; Dermabacteraceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolation: Poultry deep litter; Temp: Mesophile; Temp: 25-30C; Habitat: Soil. This organism was first isolated from poultry litter and is able to degrade uric acid but not urea. Free-living, nonmotile, Gram-positive bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
133082735562924803Island text1.8227712.993612.4394Neighbours11BLASTN330827.gbk
246630048885722558Island text1.7650612.830315.1434Neighbours11BLASTN+IslandViewer 466300.gbk
3542896*56496922074Island text1.6532212.709712.6523Neighbours11BLASTN+542896.gbk
4606387*62543019044Island text2.188911.992313.9725Neighbours11BLASTN+606387.gbk
5783097*80703523939Island text1.563612.934712.0356Neighbours11BLASTN+783097.gbk
695377297644022669Island text1.5593811.96199.53831Neighbours11BLASTN+953772.gbk
72556517257961323097Island text1.6401812.793512.9658Neighbours11BLASTN+IslandViewer 2556517.gbk
82647716*267284725132Island text1.4954313.971316.5672Neighbours11BLASTN+IslandViewer 2647716.gbk
92877722290914331422Island text2.4828316.830615.4592Neighbours11BLASTN+IslandViewer 2877722.gbk
102934572295724922678Island text1.8202412.8812.8164Neighbours11BLASTN+2934572.gbk
113093467314444250976Island text2.7334516.320315.6231Neighbours11BLASTN+IslandViewer 3093467.gbk
123141739316451822780Island text1.9325710.86766.91924Neighbours11BLASTN+3141739.gbk