Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013171: Anaerococcus prevotii DSM 20548, complete genome

NCBI: NC_013171

Host Lineage: Anaerococcus prevotii; Anaerococcus; Clostridiales Family XI; Clostridiales; Firmicutes; Bacteria

General Information: Isolation: Human plasma; Temp: Mesophile; Temp: 37C; Habitat: Host, Mouth microflora, Skin microflora. Anaerococcus prevotii, formerly Peptostreptococcus prevotii, is a member of the normal human gastrointestinal tract. However, it can be isolated from abscesses and other infections and may be considered an opportunistic pathogen.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1189178917Island text1.8933122.267140.9611BLASTN1.gbk
275110*9951724408Island text2.9762623.579239.7281Neighbours21BLASTN+75110.gbk
3228356*25488926534Island text3.1822327.515341.4803Neighbours21BLASTN+228356.gbk
4312500*33387921380Island text1.7470123.306835.391Neighbours21BLASTN+312500.gbk
5342714*39927356560Island text2.0751624.406839.5063Neighbours21BLASTN+IslandViewer 342714.gbk
641627944324226964Island text1.8328624.360139.8717Neighbours21BLASTN+416279.gbk
7497499*53792540427Island text1.8047624.523540.1882Neighbours21BLASTN+497499.gbk
8636293*65943323141Island text2.6019423.97440.5008Neighbours21BLASTN+636293.gbk
9824917*84961724701Island text3.3307725.167642.5274Neighbours21BLASTN+824917.gbk
1089680293442237621Island text2.3786722.197239.1587Neighbours21+IslandViewer 896802.gbk
111194500*122104426545Island text2.8503927.068448.6778Neighbours21BLASTN1194500.gbk
121336000*135896722968Island text1.6240522.087838.6405Neighbours21BLASTNIslandViewer 1336000.gbk
131364464*138824923786Island text2.1590823.788543.201Neighbours21BLASTN1364464.gbk
141420135*144484824714Island text3.3875826.848243.2466Neighbours21BLASTN1420135.gbk
151506500152445817959Island text1.4921524.805432.8298Neighbours21BLASTN+1506500.gbk
161567473159200724535Island text4.1868921.881136.1798Neighbours21BLASTN1567473.gbk
171677543*171632938787Island text2.9164524.778943.2195Neighbours21BLASTN1677543.gbk
181731491175657325083Island text2.3789723.859243.1374Neighbours21BLASTN+1731491.gbk
191808000183128023281Island text2.0768620.303443.0016Neighbours21BLASTN+1808000.gbk