Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_013170: Cryptobacterium curtum DSM 15641, complete genome

NCBI: NC_013170

Host Lineage: Cryptobacterium curtum; Cryptobacterium; Coriobacteriaceae; Coriobacteriales; Actinobacteria; Bacteria

General Information: Isolation: Periodontal pocket of an adult patient; Temp: Mesophile; Temp: 37C; Habitat: Host, Human oral microflora. This organism has been isolated from periodontal lesions and may play an important role in those infections.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*1459914599Island text1.5365933.140830.3244Neighbours31BLASTN1.gbk
2277321*30149324173Island text1.6629734.188637.8866Neighbours362BLASTN277321.gbk
3311045*35303541991Island text1.7491543.294839.7618BLASTN+IslandViewer 311045.gbk
4917177*94079423618Island text1.765529.65129.6138Neighbours362BLASTN+917177.gbk
51020339*104202321685Island text1.7503534.656945.2387Neighbours11BLASTN1020339.gbk