Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013169: Kytococcus sedentarius DSM 20547, complete genome

NCBI: NC_013169

Host Lineage: Kytococcus sedentarius; Kytococcus; Dermacoccaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Country: USA; Temp: Mesophile; Temp: 28 - 36C; Habitat: Marine, Skin microflora. Strain DSM 20547, the type strain, is a free-living, nonmotile, Gram-positive bacterium, originally isolated from a marine environment in about 1944. It grows as spherical/coccoid and occurs predominantly in tetrads which can be arranged in cubical packets. It is non-encapsulated and does not form endospores, is strictly aerobic and chemoorganotrophic, requires methionine and other amino acids for growth, and grows well in NaCl at concentrations up to 10% (w/v). This organism is a normal commensal of human skin, however has been implicated in pitted keratolysis, pneumonia, and other opportunistic infections.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18726911060923341Island text1.5602314.794117.6866Neighbours11BLASTN+IslandViewer 87269.gbk
247485649551820663Island text2.0326413.090613.3867Neighbours11BLASTN+474856.gbk
3513327*54059927273Island text1.8345712.672315.1937Neighbours11BLASTN+IslandViewer 513327.gbk
4612456*64773335278Island text2.1099518.51724.6476Neighbours11BLASTN+IslandViewer 612456.gbk
580512482366418541Island text1.6742512.788814.5328Neighbours11BLASTN+IslandViewer 805124.gbk
61058463*108536926907Island text2.2330214.237213.3086Neighbours11BLASTN+1058463.gbk
71290000131283622837Island text1.4715514.761715.9581Neighbours11BLASTN+1290000.gbk
81410384*143716826785Island text2.1710916.293818.8008Neighbours11BLASTN+1410384.gbk
91545890*156556719678Island text2.1157611.341812.0173Neighbours11BLASTN+1545890.gbk
101661135*168009918965Island text1.8089313.217416.0616Neighbours11BLASTN1661135.gbk
111759900*178341323514Island text1.666311.192913.6314Neighbours11BLASTN+1759900.gbk
121845735*186893023196Island text2.3177913.620612.7483Neighbours11BLASTN+IslandViewer 1845735.gbk
131941410196745126042Island text2.0163213.495713.6877Neighbours11BLASTN+1941410.gbk
142045000206559920600Island text1.527616.191322.8016Neighbours11BLASTN+2045000.gbk
152104597212575721161Island text1.6822814.711315.2201Neighbours11BLASTN+IslandViewer 2104597.gbk
162147111*217279325683Island text1.54615.888320.3104Neighbours11BLASTN+2147111.gbk
172351475238021528741Island text1.9857114.861920.5318Neighbours11BLASTN+IslandViewer 2351475.gbk
182423863245464230780Island text1.7130713.353510.5624Neighbours11BLASTN+IslandViewer 2423863.gbk
192581500260290921410Island text2.4114714.145613.2941Neighbours11BLASTN+2581500.gbk