Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013166: Kangiella koreensis DSM 16069, complete genome

NCBI: NC_013166

Host Lineage: Kangiella koreensis; Kangiella; Alcanivoracaceae; Oceanospirillales; Proteobacteria; Bacteria

General Information: Isolation: Sea water of tidal flat sediment in the Yellow Sea; Country: South Korea; Temp: Mesophile; Temp: 30 - 37C; Habitat: Marine. This organism is a moderately halophilic, Gram-negative bacterium found in coastal, marine environments.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1324748099448521Island text2.3122129.086822.1505Neighbours21BLASTN+IslandViewer 32474.gbk
28298611024727262Island text1.5310534.148132.2624Neighbours41BLASTN+IslandViewer 82986.gbk
3194614*21572421111Island text2.1216627.04236.7567Neighbours21BLASTN+194614.gbk
424286326142618564Island text1.6778326.510823.5961Neighbours21BLASTN+242863.gbk
5417862*43959921738Island text1.9580833.600751.2328Neighbours21BLASTN417862.gbk
678433980500320665Island text1.5870226.796648.3839Neighbours41BLASTN784339.gbk
796143198377922349Island text1.8682526.665921.4414Neighbours21BLASTNIslandViewer 961431.gbk
81149760*117306623307Island text1.8238733.119548.3937Neighbours21BLASTN1149760.gbk
91341575136445022876Island text1.3797527.109720.2643Neighbours21BLASTN+IslandViewer 1341575.gbk
101409790143362423835Island text1.6159627.255617.9498Neighbours21BLASTN+1409790.gbk
111841446*185969318248Island text1.6808325.680934.2064Neighbours21BLASTNIslandViewer 1841446.gbk