Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013165: Slackia heliotrinireducens DSM 20476, complete genome

NCBI: NC_013165

Host Lineage: Slackia heliotrinireducens; Slackia; Coriobacteriaceae; Coriobacteriales; Actinobacteria; Bacteria

General Information: Isolation: Sheep rumen; Country: Australia; Temp: Mesophile; Temp: 42 - 48C; Habitat: Rumen. Formerly Peptococcus heliotrinreducans, this organism was isolated from the rumen of a sheep. This organism can degrade the toxic alkaloid heliotrine which is produced by the plant Heliotropium europaeum.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
132918538934160157Island text2.3897232.507436.0604Neighbours11BLASTN+IslandViewer 329185.gbk
241309844211129014Island text2.4546632.483239.0322Neighbours11BLASTN+IslandViewer 413098.gbk
364789467201824125Island text1.822528.284938.8036Neighbours11647894.gbk
41294000*132593631937Island text1.7383225.853426.8334Neighbours11BLASTN1294000.gbk
51407000144671139712Island text2.9305436.997241.5065Neighbours11BLASTNIslandViewer 1407000.gbk
61584977161358628610Island text1.8762429.273929.1046Neighbours11BLASTNIslandViewer 1584977.gbk
71665014168809923086Island text1.7245126.556426.4017Neighbours11BLASTN+1665014.gbk
81780321179987419554Island text2.0191125.289419.6339Neighbours11BLASTNIslandViewer 1780321.gbk
92240377227376133385Island text2.5451540.528630.0067Neighbours11BLASTN+IslandViewer 2240377.gbk
102440883*246471323831Island text1.3970126.471330.1072Neighbours11BLASTN+IslandViewer 2440883.gbk
112700978272253421557Island text1.5676327.115834.3038Neighbours11BLASTN+IslandViewer 2700978.gbk
123146000*318049934500Island text2.2163334.333732.6209Neighbours11BLASTN+IslandViewer 3146000.gbk