Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013164: Anaerococcus prevotii DSM 20548 plasmid pAPRE01, complete sequence

NCBI: NC_013164

Host Lineage: Anaerococcus prevotii; Anaerococcus; Clostridiales Family XI; Clostridiales; Firmicutes; Bacteria

General Information: Isolation: Human plasma; Temp: Mesophile; Temp: 37C; Habitat: Host, Mouth microflora, Skin microflora. Anaerococcus prevotii, formerly Peptostreptococcus prevotii, is a member of the normal human gastrointestinal tract. However, it can be isolated from abscesses and other infections and may be considered an opportunistic pathogen.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1675008885521356Island text1.713310.959431.0006Neighbours21BLASTN67500.gbk