Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_013162: Capnocytophaga ochracea DSM 7271, complete genome

NCBI: NC_013162

Host Lineage: Capnocytophaga ochracea; Capnocytophaga; Flavobacteriaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: Capnocytophaga ochracea DSM 7271 was isolated from the human oral cavity. This organism causes periodontal disease and can also be an opportunistic pathogens, causing septicemia, peritonitis, endocarditis and conjunctivitis in susceptible patients. These are Gram-negative, anaerobic gliding bacteria isolated from normal human supragingival plaque and from periodontal lesions.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1769915*81175941845Island text1.6881727.746147.4605Neighbours21BLASTN+769915.gbk
281176383478623024Island text1.445427.632541.1743Neighbours23BLASTN811763.gbk
31015500103387418375Island text1.5591324.69638.0923Neighbours21BLASTN+1015500.gbk
41043357106210218746Island text1.9612825.243245.9161Neighbours211043357.gbk
51130554115096920416Island text1.5512734.484436.3382Neighbours23BLASTN+1130554.gbk
61176000120122425225Island text1.6184327.669443.7255Neighbours23BLASTN1176000.gbk
71364888*138809923212Island text1.5243826.307138.3847Neighbours21BLASTN1364888.gbk