Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013161: Cyanothece sp. PCC 8802, complete genome

NCBI: NC_013161

Host Lineage: Cyanothece; Cyanothece; ; Chroococcales; Cyanobacteria; Bacteria

General Information: Isolation: Rice fields in southern Taiwan; Country: Taiwan; Temp: Mesophile; Habitat: Fresh water. Cyanothece 8802, like many cyanobacterial strains, can grow as an autotroph with CO(2) as carbon source. However, its optimum growth in the laboratory requires addition of an inorganic carbon source such as bicarbonate. Like many other Cyanothece species it fixes not only CO(2) but also N(2).



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1212941*24052127581Island text1.6704530.68940.7933Neighbours329BLASTN+212941.gbk
227600029947223473Island text1.7194820.245618.3518Neighbours21BLASTN+276000.gbk
31023716104703423319Island text1.4426929.122142.6666Neighbours329BLASTN1023716.gbk
41801904*182685024947Island text1.6682731.154235.9575Neighbours329BLASTN+1801904.gbk
51878700190383825139Island text1.6874428.278729.0679Neighbours329BLASTN1878700.gbk
62804228282828424057Island text1.7161421.434219.6309Neighbours21BLASTN2804228.gbk
73071105*309446223358Island text1.3952826.574733.244Neighbours21BLASTN3071105.gbk
83448966*347125922294Island text1.5511827.320727.9789Neighbours21BLASTN+3448966.gbk
94093322411194818627Island text1.5044621.774734.7119Neighbours21BLASTN+4093322.gbk
104209554*423209922546Island text1.5357522.476922.5241Neighbours21BLASTN+4209554.gbk