Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013158: Halorhabdus utahensis DSM 12940, complete genome

NCBI: NC_013158

Host Lineage: Halorhabdus utahensis; Halorhabdus; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Isolation: Sediment of Great Salt Lake, Utah; Country: USA; Temp: Mesophile; Temp: 50C; Habitat: Soil. Extreme halophilic archaeon. This organism is an obligately halophilic microorganisms which has adapted to optimal growth under conditions of extremely high salinity up to 10 times that of sea water.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1200424*24774547322Island text1.885227.868821.0211Neighbours11BLASTNIslandViewer 200424.gbk
2363222*38837325152Island text1.4809725.030427.817Neighbours12BLASTN+363222.gbk
3768000*79188423885Island text1.947126.352728.5271Neighbours11BLASTN+IslandViewer 768000.gbk
41027015106393436920Island text2.7799532.901231.5414Neighbours11BLASTN+IslandViewer 1027015.gbk
51085937111446728531Island text3.8988940.838926.8101Neighbours11BLASTNIslandViewer 1085937.gbk
61620761164378523025Island text1.6850623.2321.8689Neighbours11BLASTN+1620761.gbk
71659426*168353924114Island text1.7678924.845426.4675Neighbours11BLASTN1659426.gbk
81686239173258546347Island text2.5000232.582125.1295Neighbours12BLASTNIslandViewer 1686239.gbk
91905643194066435022Island text2.2817229.494919.9547Neighbours12BLASTNIslandViewer 1905643.gbk
102046185209739951215Island text2.3966830.059630.8607Neighbours12BLASTNIslandViewer 2046185.gbk
112170083220126331181Island text3.6275738.912328.583Neighbours12BLASTNIslandViewer 2170083.gbk
122303000*232553522536Island text2.3350627.482228.2915Neighbours11BLASTNIslandViewer 2303000.gbk
132714778*274059925822Island text2.4099331.665133.6603Neighbours11BLASTN2714778.gbk
142937239295708219844Island text1.5021123.759733.0856Neighbours12BLASTN2937239.gbk