Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013157: Methanocaldococcus fervens AG86 plasmid pMEFER01, complete

NCBI: NC_013157

Host Lineage: Methanocaldococcus fervens; Methanocaldococcus; Methanocaldococcaceae; Methanococcales; Euryarchaeota; Archaea

General Information: Isolation: Deep-sea hydrothermal chimney sample; Temp: Thermophile; Temp: 49 - 89C; Habitat: Deep sea, Marine. Hyperthermophilic methanogen. Methanocaldococcus fervens was isolated from a core sample from a deep sea hydrothermal vent in the Guayamas Basin of the Gulf of California.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112399923999Island text1.3919617.424641.0891Neighbours21BLASTN+1.gbk