Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013156: Methanocaldococcus fervens AG86, complete genome

NCBI: NC_013156

Host Lineage: Methanocaldococcus fervens; Methanocaldococcus; Methanocaldococcaceae; Methanococcales; Euryarchaeota; Archaea

General Information: Isolation: Deep-sea hydrothermal chimney sample; Temp: Thermophile; Temp: 49 - 89C; Habitat: Deep sea, Marine. Hyperthermophilic methanogen. Methanocaldococcus fervens was isolated from a core sample from a deep sea hydrothermal vent in the Guayamas Basin of the Gulf of California.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
121781*4594724167Island text1.9294818.971234.0054Neighbours21BLASTN21781.gbk
2127000*14636819369Island text1.6243819.55434.4378Neighbours21BLASTN+127000.gbk
315423317577221540Island text2.0332521.785836.5399Neighbours21BLASTN154233.gbk
4182896*20918626291Island text2.9954935.990831.1874Neighbours21BLASTN182896.gbk
522621524864022426Island text2.0449920.699428.3556Neighbours21BLASTN226215.gbk
638191040470722798Island text1.4718821.03634.7424Neighbours21BLASTN+381910.gbk
7431795*46884337049Island text1.7117920.960632.374Neighbours21BLASTN+431795.gbk
8471978*49458922612Island text1.856219.187730.0707Neighbours21BLASTN471978.gbk
9573037*59668923653Island text1.7547519.181735.6986Neighbours21BLASTN+573037.gbk
10633475*65768324209Island text2.4495823.463442.3781Neighbours21BLASTN633475.gbk
11728397*75292924533Island text1.9764118.625435.0834Neighbours21BLASTN728397.gbk
12875975*90319627222Island text1.9908124.056433.3719Neighbours21BLASTN+875975.gbk
13980888*101686335976Island text1.9344620.213731.5815Neighbours21BLASTN+980888.gbk
141182609*120429421686Island text2.2644920.499535.8231Neighbours21BLASTN+1182609.gbk
151240926126131620391Island text1.898620.149236.0722Neighbours21BLASTN+1240926.gbk
161451904147317021267Island text1.6519820.729733.6315Neighbours21BLASTN1451904.gbk