Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013132: Chitinophaga pinensis DSM 2588, complete genome

NCBI: NC_013132

Host Lineage: Chitinophaga pinensis; Chitinophaga; Chitinophagaceae; Sphingobacteriales; Bacteroidetes; Bacteria

General Information: Isolation: Pine litter in Australia; Country: Australia; Temp: Mesophile; Temp: 23 - 24C; This organism is motile by gliding and is able to degrade chitin.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
135061*6459929539Island text2.9989230.07225.6211Neighbours21+IslandViewer 35061.gbk
2153163*18111827956Island text3.066930.531226.3485Neighbours21+153163.gbk
332774335018122439Island text1.5586731.029650.9753Neighbours358BLASTN327743.gbk
4705314*72376218449Island text1.7242927.222220.5506Neighbours21BLASTN705314.gbk
5782846*80287020025Island text1.472928.316542.6087Neighbours358BLASTN782846.gbk
6893849*91736123513Island text1.5831129.451624.8422Neighbours21BLASTN+893849.gbk
71165218*119434629129Island text3.5480830.814819.1185Neighbours21BLASTN1165218.gbk
81652477*167461422138Island text2.3741330.149626.1962Neighbours21BLASTN+1652477.gbk
91689172*173224843077Island text2.1043335.870353.495BLASTN1689172.gbk
102523780*254920825429Island text2.0280825.732634.0175Neighbours21BLASTN2523780.gbk
113081806*310409922294Island text1.9496726.085220.1303Neighbours21BLASTN3081806.gbk
123118043313844520403Island text2.1214927.51722.9078Neighbours21BLASTN+IslandViewer 3118043.gbk
133605317*362904323727Island text1.6282924.191419.7223Neighbours41BLASTN+3605317.gbk
143704288*372969825411Island text1.8606427.247423.7275Neighbours21BLASTN3704288.gbk
153877500*391326535766Island text2.6403727.413716.6371Neighbours213877500.gbk
163959258*398470525448Island text2.8149829.2916.8555Neighbours21IslandViewer 3959258.gbk
174355363*439298537623Island text3.2308131.034912.7098Neighbours21BLASTN+4355363.gbk
184803460482809924640Island text1.9171527.132443.2781Neighbours358+IslandViewer 4803460.gbk
195250385*527709126707Island text2.2989828.157429.4616Neighbours21BLASTN+IslandViewer 5250385.gbk
205462652548645923808Island text1.6501227.067147.5332Neighbours358BLASTN5462652.gbk
215792000*581372621727Island text1.5897527.374440.2237Neighbours21BLASTN5792000.gbk
225942981597163828658Island text1.9411427.05824.6437Neighbours21BLASTN+IslandViewer 5942981.gbk
236385223*641175426532Island text2.0032525.963615.0688Neighbours21BLASTN6385223.gbk
246612520664216029641Island text1.4679130.265148.8915Neighbours37BLASTN+6612520.gbk
257204082*723057026489Island text2.2924130.994214.177Neighbours21BLASTN7204082.gbk
267954000*799998145982Island text1.757331.799424.6426Neighbours21BLASTN+IslandViewer 7954000.gbk
278732093875679624704Island text1.5246329.882154.1844Neighbours358BLASTN+8732093.gbk
288871718889526723550Island text1.6273827.699428.5297Neighbours21BLASTN+8871718.gbk