Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013131: Catenulispora acidiphila DSM 44928, complete genome

NCBI: NC_013131

Host Lineage: Catenulispora acidiphila; Catenulispora; Catenulisporaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolation: Forest soil from Gerenzano Italy; Country: Italy; Temp: Mesophile; Temp: 22 - 28C; Habitat: Soil. Catenulispora acidiphila DSM 44928 was originally isolated from forest soil in Gerenzano, Italy.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
156209958047618378Island text2.0097112.813111.1098Neighbours11BLASTN562099.gbk
2621366*64479723432Island text2.1828614.357315.6983Neighbours11BLASTN+621366.gbk
397193799495423018Island text1.436616.105328.4748Neighbours11BLASTN+971937.gbk
41593840162389230053Island text2.1469719.283218.6709Neighbours11BLASTN1593840.gbk
52517861*253698619126Island text1.8658914.322431.6319NeighboursBLASTNIslandViewer 2517861.gbk
63222500324156619067Island text1.6472812.493912.9918Neighbours11BLASTN3222500.gbk
73303337332128317947Island text1.6533912.61867.33951Neighbours11BLASTN+IslandViewer 3303337.gbk
83473843*349585522013Island text1.5392417.397932.0704Neighbours11BLASTN+IslandViewer 3473843.gbk
94356247438238126135Island text1.8654814.045315.4677Neighbours11BLASTN+4356247.gbk
104422000445003328034Island text1.8122915.940421.9748Neighbours11BLASTN+4422000.gbk
114473410449211718708Island text1.5217114.7122.2896Neighbours11BLASTN+4473410.gbk
124525075*454912724053Island text2.0019415.997718.5122Neighbours11BLASTN+4525075.gbk
135226919*525205225134Island text1.6377917.542930.5397Neighbours11BLASTNIslandViewer 5226919.gbk
146329438635948930052Island text1.8591615.693315.8991Neighbours11BLASTN+IslandViewer 6329438.gbk
157401253*742304021788Island text1.5326814.044323.3646Neighbours11BLASTN+7401253.gbk
167437831745730019470Island text1.4927414.965312.0843Neighbours11BLASTN7437831.gbk
177530000*755241822419Island text1.6367813.825415.9033Neighbours11BLASTN7530000.gbk
187889127*791526926143Island text1.8230712.335811.6701Neighbours11BLASTN+IslandViewer 7889127.gbk
197945280799850753228Island text1.7382313.589618.2112Neighbours11BLASTN+7945280.gbk
208029621805301123391Island text1.6560913.153617.1458Neighbours11BLASTN8029621.gbk
218480384*852686646483Island text2.8703221.719718.3682Neighbours11BLASTNIslandViewer 8480384.gbk
229711508973462123114Island text1.4275713.016813.0832Neighbours11BLASTN9711508.gbk
239903320*995737154052Island text2.0501815.84414.4656Neighbours11BLASTN+IslandViewer 9903320.gbk
2499769291000446227534Island text2.6754817.716521.861Neighbours11BLASTN+9976929.gbk
2510322152*1035840336252Island text1.9065116.661414.0736Neighbours11BLASTN+10322152.gbk
2610370765*1039309922335Island text1.9450616.065210.3216Neighbours11BLASTN+10370765.gbk
2710413240*1043185718618Island text1.494414.311820.8308Neighbours11BLASTN+IslandViewer 10413240.gbk