Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013124: Acidimicrobium ferrooxidans DSM 10331, complete genome

NCBI: NC_013124

Host Lineage: Acidimicrobium ferrooxidans; Acidimicrobium; Acidimicrobiaceae; Acidimicrobiales; Actinobacteria; Bacteria

General Information: Isolation: Hot spring run-off in Iceland; Country: Iceland; Temp: Thermophile; Temp: 48C; Habitat: Fresh water. This organism is a thermophilic, acidophilic bacterium that grows optimiums of 45-50 degrees C and pH2. This organism is able to oxidize ferric iron to ferrous iron.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11107202*113038923188Island text1.9902417.21423.593Neighbours11BLASTN+1107202.gbk
21439915*146670526791Island text1.7067418.477226.127Neighbours11BLASTN+IslandViewer 1439915.gbk
31544821*156380218982Island text1.4905418.713524.6315Neighbours11BLASTN+IslandViewer 1544821.gbk
41606879*163180724929Island text2.012318.333325.6613Neighbours11BLASTN1606879.gbk
51784117180777323657Island text1.7403320.205835.929Neighbours11BLASTN1784117.gbk
62063460208758424125Island text1.6450315.219721.5035Neighbours11BLASTN+2063460.gbk