Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_013123: Candidatus Sulcia muelleri SMDSEM, complete genome

NCBI: NC_013123

Host Lineage: Sulcia muelleri; Sulcia; ; Flavobacteriales; Bacteroidetes; Bacteria

General Information: Candidatus Sulcia muelleri is a gut symbiont of the Blue-Green Sharpshooter and several other leafhopper species. It synthesizes amino acids for the host, enabling the leafhopper to live on a diet of plant sap. The Blue-Green Sharpshooter is an important vector for Pierce's Disease in plants, caused by the spread of Xylella fastidiosa.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
159918*8173721820Island text1.6159712.366219.9903Neighbours21BLASTN59918.gbk
278786*10552026735Island text2.5936517.938129.9887Neighbours21BLASTN78786.gbk
3116465*13629019826Island text1.8044210.332616.9509Neighbours21BLASTN116465.gbk