Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013119: Brucella microti CCM 4915 chromosome 1, complete sequence

NCBI: NC_013119

Host Lineage: Brucella microti; Brucella; Brucellaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Brucella microti was isolated in 2000 from systemically infected voles in South Moravia, Czech Republic and has been more recently isolated from foxes and apparently free-living in soil in Czech soil. The organism is characterized by rapid growth on standard media and high metabolic activity, which is atypical for Brucella.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
151150053923527736Island text2.0297829.348429.574Neighbours41BLASTN+IslandViewer 511500.gbk
270780473048622683Island text1.5564831.207427.1531Neighbours11BLASTN+707804.gbk
3942079*96756725489Island text1.6558930.137422.8591Neighbours11BLASTN+IslandViewer 942079.gbk
41932402*195673624335Island text1.7799529.776739.444Neighbours46BLASTN+IslandViewer 1932402.gbk