Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_013062: Flavobacteriaceae bacterium 3519-10, complete genome

NCBI: NC_013062

Host Lineage: Flavobacteriaceae bacterium; Flavobacteriaceae; unclassified Flavobacteriaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: This bacterium was cultured from ancient Antarctic ice (>420,000 yrs). It produces a protein that appears critical to survival in ice.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1421779*44660124823Island text1.7030828.381441.3676Neighbours39BLASTN+421779.gbk
262700068009253093Island text2.3094228.008423.4078Neighbours21BLASTN+627000.gbk
31141865116309921235Island text2.1967124.78616.0065Neighbours21BLASTN+IslandViewer 1141865.gbk
41298500132791629417Island text2.3452824.873216.4871Neighbours21BLASTN+IslandViewer 1298500.gbk
52162417*218409921683Island text2.0461124.721135.0974Neighbours39BLASTN2162417.gbk