Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013037: Dyadobacter fermentans DSM 18053, complete genome

NCBI: NC_013037

Host Lineage: Dyadobacter fermentans; Dyadobacter; Cytophagaceae; Cytophagales; Bacteroidetes; Bacteria

General Information: Isolation: Surface sterilized stems from Zea mays; Country: USA; Temp: Mesophile; Temp: 28C; Habitat: Host, Soil. Dyadobacter fermentans is a non-nitrogen-fixing bacterium isolated in an attempt to characterize the bacterial community that exists endophytically with Zea mays grown on a nitrogen-limited medium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1489008214033241Island text1.5137637.682435.09Neighbours23BLASTN48900.gbk
257800060693028931Island text1.791938.842725.7715Neighbours35BLASTN+IslandViewer 578000.gbk
31015210104796332754Island text2.1478740.824134.4518Neighbours41BLASTN+IslandViewer 1015210.gbk
41072266111100038735Island text2.3201446.038716.7308Neighbours21BLASTN+IslandViewer 1072266.gbk
51587673161264724975Island text1.5163939.275326.0994Neighbours111587673.gbk
62043921207105927139Island text2.1286544.005825.8558Neighbours35BLASTN+2043921.gbk
72231006*225104620041Island text1.4960636.132137.3188Neighbours352231006.gbk
82305585233187626292Island text1.978842.765518.8022Neighbours41BLASTN+IslandViewer 2305585.gbk
92364514*239914534632Island text1.8250340.434223.9232Neighbours35BLASTN+IslandViewer 2364514.gbk
102851940*289313341194Island text1.6875742.189820.4002Neighbours41BLASTN+IslandViewer 2851940.gbk
112906730292651119782Island text1.5030137.907336.4417Neighbours41BLASTN+IslandViewer 2906730.gbk
123994083*401388919807Island text1.5760631.737952.3252Neighbours11BLASTN3994083.gbk
134623179*464391320735Island text1.5411331.008251.6952Neighbours35BLASTN4623179.gbk
145051561*507909927539Island text1.6377832.964552.9074Neighbours35BLASTN+IslandViewer 5051561.gbk
155263272*529310829837Island text1.7113143.011643.7939Neighbours29BLASTN5263272.gbk
165395951*541490618956Island text1.5228637.934720.5476Neighbours35BLASTN+5395951.gbk
175442131546564123511Island text1.8520238.01938.0132Neighbours35BLASTN5442131.gbk
185536433*556659330161Island text1.8342241.386430.3759Neighbours35BLASTNIslandViewer 5536433.gbk
195587802561018522384Island text1.4540934.685135.7595Neighbours35BLASTN+5587802.gbk
206209424*625316043737Island text1.5345436.895724.9661Neighbours11BLASTN+IslandViewer 6209424.gbk
216281164*634134960186Island text2.1076545.924424.1191Neighbours319BLASTN+IslandViewer 6281164.gbk
226344532636995125420Island text1.8363343.4234.2368Neighbours35BLASTN6344532.gbk