Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013009: Neorickettsia risticii str. Illinois, complete genome

NCBI: NC_013009

Host Lineage: Neorickettsia risticii; Neorickettsia; Anaplasmataceae; Rickettsiales; Proteobacteria; Bacteria

General Information: Neorickettsia risticii str. Illinois was isolated from horse blood in Maryland, USA. Neorickettsia risticii, formerly Ehrlichia risticii, is an obligate intracellular bacterium related to the Rickettsia. It can be transmitted from flukes that infest snails, fish or aquatic insects to horses by ingestion. This organism causes Potomac horse fever, also knows as equine monocytic ehrlichiosis, an acute diarrheal disease.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1122000*14610024101Island text1.7191628.650952.6495Neighbours21BLASTN+122000.gbk
2225722*24773622015Island text1.9134930.364754.6151Neighbours314BLASTN225722.gbk
3270000*29310323104Island text1.7714526.471350.8344Neighbours21BLASTN+270000.gbk
4353690*37609922410Island text1.5905125.83648.3676Neighbours21BLASTN+353690.gbk
5532000*55409922100Island text2.1520129.40150.4374Neighbours21BLASTN532000.gbk
6562470*60259940130Island text1.8188828.271647.8526Neighbours21BLASTN562470.gbk
7608515*62950520991Island text2.1405228.607355.7376Neighbours21BLASTN608515.gbk
8689978*71274122764Island text1.6971226.513947.2713Neighbours21BLASTN689978.gbk
9721823*74101519193Island text1.8602426.130843.5985Neighbours21BLASTN721823.gbk
10809681*82858618906Island text1.9138526.532149.8721Neighbours21809681.gbk