Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012997: Teredinibacter turnerae T7901, complete genome

NCBI: NC_012997

Host Lineage: Teredinibacter turnerae; Teredinibacter; ; Alteromonadales; Proteobacteria; Bacteria

General Information: Teredinibacter turnerae was isolated from the gills of the wood-boring mollusc, Lyrodus pedicellatus. Dinitrogen-fixing, cellulolytic, endosymbiont. This organism is a rare example of a marine invertebrate symbiont that has been grown in pure culture. They have the unique ability to be able to both utilize cellulose as a sole carbon source and also to fix nitrogen.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1594078341424008Island text1.7770632.487242.423Neighbours57BLASTN59407.gbk
233450035551521016Island text1.9057232.991941.0334Neighbours57BLASTN334500.gbk
3541648*56744125794Island text2.1999535.420326.4401Neighbours57BLASTN541648.gbk
481755384234124789Island text2.269437.645334.0751Neighbours57BLASTN+IslandViewer 817553.gbk
51335902135943323532Island text2.180537.088232.0654Neighbours57BLASTN+IslandViewer 1335902.gbk
61446037*147363527599Island text3.5915640.200939.4419NeighboursBLASTN+IslandViewer 1446037.gbk
71689583171209922517Island text1.6243433.406449.1193BLASTN1689583.gbk
81820734187080550072Island text2.0856336.478836.9066Neighbours43BLASTN+IslandViewer 1820734.gbk
92059092*210009941008Island text1.7627731.654339.8039Neighbours57BLASTN+2059092.gbk
102107933212659918667Island text1.8527231.870153.8555Neighbours57BLASTN+2107933.gbk
112254000228113427135Island text1.9909133.725237.5176Neighbours21BLASTN+IslandViewer 2254000.gbk
122367400239453827139Island text1.8823931.35448.8368Neighbours57BLASTN+2367400.gbk
132405500*245517849679Island text2.4417736.147435.4497Neighbours21BLASTN+2405500.gbk
142517130*254093523806Island text1.7092434.316523.6021Neighbours510BLASTN2517130.gbk
152560324*259351033187Island text1.6823232.501428.5455Neighbours57BLASTN+2560324.gbk
162941627297169930073Island text1.6679532.868939.0768Neighbours41BLASTN+IslandViewer 2941627.gbk
173185248*321971734470Island text2.0895635.404339.1912Neighbours57+3185248.gbk
183651993367433122339Island text1.4593732.952339.6699Neighbours57BLASTN+3651993.gbk
194026000405912333124Island text2.700138.216535.943Neighbours41BLASTN+IslandViewer 4026000.gbk
204114526414919834673Island text1.8765233.398332.0516Neighbours41+IslandViewer 4114526.gbk
214152938417917626239Island text2.4356738.489134.7639Neighbours57BLASTN4152938.gbk
224491871451426222392Island text1.5979633.638527.5229Neighbours510BLASTN+4491871.gbk
234545875458787642002Island text2.8276237.530138.4066Neighbours21BLASTNIslandViewer 4545875.gbk
244621764464391922156Island text1.7840234.740539.4384Neighbours57BLASTN+4621764.gbk
254672147469888626740Island text1.7282633.90344.7613Neighbours57BLASTN4672147.gbk
264906423494059934177Island text2.3956734.832534.2859Neighbours314BLASTN+IslandViewer 4906423.gbk